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dominicrufa
openmmtools
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Commits on Sep 8, 2022
Fix doc builds (#622)
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Commits on Sep 2, 2022
add python 3.10 to CI (#619)
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Commits on Aug 3, 2022
Merge pull request #617 from choderalab/release-0.21.5
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fix formatting
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Commits on Aug 2, 2022
More informative changelog entries. Updated pull request template to ask for a changelog message.
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Release 0.21.5 - bugfix release candidate. Added entries in changelog.
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`LangevinDynamicsMove` now accepts `constraint_tolerance` parameter (#611)
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Merge pull request #613 from choderalab/612-serialized-velocities-fix
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Merge branch 'main' into 612-serialized-velocities-fix
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Building path using os library instead of f-strings. (#616)
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Merge branch 'main' into 612-serialized-velocities-fix
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Commits on Aug 1, 2022
Comment on fix for enabling reading from older serialized objects.
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Reworking class inheritance for resuming serialized objects test.
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Fix equilibration detection (#610)
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Commits on Jul 29, 2022
Add velocities variable to storage and initialize velocities to zeros if not found.
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Test resuming from legacy reporter files (no velocities). Adding test files.
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Commits on Jul 28, 2022
Restore velocities only if found in serialized nc file. Back compatibility for older nc files.
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Commits on Jul 20, 2022
pin pymbar to stay on 3.x version
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Adding major contributors (#606)
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Commits on Jul 19, 2022
Logs directly used platform in minimization and propagation of replicas (#605)
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Commits on Jul 14, 2022
Fixes #599 : Change LangevinDynamicsMove to use openmm.LangevinMiddleIntegrator instead of openmm.LangevinIntegrator (#600)
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Returning velocities in sampler state when propagating replicas (#602)
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Commits on Jun 8, 2022
Release 0.21.4 - bugfix release (#590)
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Commits on Jun 7, 2022
Handling unsampled states in offline/realtime analysis. (#593)
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Commits on Jun 2, 2022
fixes choderalab/openmmtools#579 (#587)
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Commits on Jun 1, 2022
Allow overriding of n_equilibration_iterations and statistical_inefficiency args for computation of free energy (#586)
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Commits on May 31, 2022
Fix for issue #539 (#588)
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Commits on May 27, 2022
Fix performance estimates (#578)
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Commits on May 12, 2022
Fix GPU CI
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Commits on May 6, 2022
Merge pull request #580 from choderalab/feat/add_gpu_ci
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pin ubuntu version and bump checkout action version
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sort the deps, remove whitespace, remove double cython entry
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Merge branch 'main' into feat/add_gpu_ci
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Commits on Apr 25, 2022
Force statistical inefficiency computation to use self.max_n_iterations (#577)
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Commits on Apr 22, 2022
Add self hosted aws gpu testing
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