From 7f0b50c8abe1e2a7f1fa14d11c973ebd3a51887d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mihai=20Capot=C4=83?= Date: Tue, 24 Oct 2017 09:52:56 -0700 Subject: [PATCH 1/2] dev: Change GitHub organization to BrainIAK --- CONTRIBUTING.rst | 2 +- NEWS.rst | 44 +++++++++++++++--------------- README.rst | 20 +++++++------- docs/newsfragments/274.removal | 1 + docs/newsfragments/_template.jinja | 2 +- 5 files changed, 35 insertions(+), 34 deletions(-) create mode 100644 docs/newsfragments/274.removal diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 940e435f3..04347d42c 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -45,7 +45,7 @@ step-by-step description of our recommended workflow: 3. Add the official BrainIAK repository as the ``upstream`` remote:: - git remote add upstream https://github.com/IntelPNI/brainiak + git remote add upstream https://github.com/brainiak/brainiak 4. Set the ``master`` branch to track the ``upstream`` remote:: diff --git a/NEWS.rst b/NEWS.rst index c8e493e33..c7ba252ef 100644 --- a/NEWS.rst +++ b/NEWS.rst @@ -9,19 +9,19 @@ Features -------- - FCMA partial similarity matrix option. (`#168 - `_) + `_) - Faster FCMA cross validation via multiprocessing. (`#176 - `_) + `_) - Inter-subject correlation (ISC) and inter-subject functional correlation - (ISFC). (`#183 `_) + (ISFC). (`#183 `_) - Input/output and image modules with high-level APIs. (`#209 - `_) + `_) - FCMA support for random permutations. (`#217 - `_) + `_) - A distributed version of SRM. (`#220 - `_) + `_) - Shape masks for the searchlight. (`#221 - `_) + `_) Deprecations and removals @@ -29,7 +29,7 @@ Deprecations and removals - Changed fmrisim to compute signal-to-fluctuation-noise ratio (SFNR) instead of signal-to-noise ratio (SNR). (`#224 - `_) + `_) BrainIAK 0.4 (2017-01-19) @@ -39,12 +39,12 @@ Features -------- - Distributed searchlight. (`#148 - `_) + `_) - Multi-voxel pattern analysis (MVPA) support in FCMA. (`#154 - `_, `#157 - `_) + `_, `#157 + `_) - Fast Pearson correlation coefficient computation. (`#159 - `_) + `_) BrainIAK 0.3.2 (2016-10-31) =========================== @@ -53,9 +53,9 @@ Features -------- - Faster event segmentation via Cython implementation. (`#111 - `_) + `_) - fMRI data simulator (fmrisim). (`#135 - `_) + `_) BrainIAK 0.3.1 (2016-09-30) @@ -64,16 +64,16 @@ BrainIAK 0.3.1 (2016-09-30) Features -------- -- Event segmentation. (`#72 `_) +- Event segmentation. (`#72 `_) - Full correlation matrix analysis (FCMA). (`#97 - `_, `#122 - `_) + `_, `#122 + `_) - Bayesian representational similarity analysis (BRSA). (`#98 - `_) + `_) - Deterministic SRM. (`#102 - `_) + `_) - Semi-supervised shared response model (SSSRM). (`#108 - `_) + `_) BrainIAK 0.3 (2016-09-30) [YANKED] @@ -87,14 +87,14 @@ Features -------- - Hyperparameter optimization. (`#58 - `_) + `_) Deprecations and removals ------------------------- - Removed ``_`` from package names. (`#73 - `_) + `_) BrainIAK 0.1 (2016-07-12) diff --git a/README.rst b/README.rst index 6bd5582ea..1d0d62892 100644 --- a/README.rst +++ b/README.rst @@ -1,12 +1,12 @@ Brain Imaging Analysis Kit ========================== -.. image:: https://travis-ci.org/IntelPNI/brainiak.svg?branch=master - :target: https://travis-ci.org/IntelPNI/brainiak +.. image:: https://travis-ci.org/brainiak/brainiak.svg?branch=master + :target: https://travis-ci.org/brainiak/brainiak -.. image:: https://badges.gitter.im/IntelPNI/brainiak.svg - :alt: Join the chat at https://gitter.im/IntelPNI/brainiak - :target: https://gitter.im/IntelPNI/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge +.. image:: https://badges.gitter.im/brainiak/brainiak.svg + :alt: Join the chat at https://gitter.im/brainiak/brainiak + :target: https://gitter.im/brainiak/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge The Brain Imaging Analysis Kit is a package of Python modules useful for neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI) @@ -99,7 +99,7 @@ Note that you may see a ``Failed building wheel for brainiak`` message (`issue as long as you see ``Successfully installed`` at the end. .. _issue #61: - https://github.com/IntelPNI/brainiak/issues/61 + https://github.com/brainiak/brainiak/issues/61 Until we reach version 1.0, we will only support the latest released version. Therefore, if you have a problem with an older version, please upgrade to the @@ -110,10 +110,10 @@ Examples We include BrainIAK usage examples in the examples directory of the code repository, e.g., `funcalign/srm_image_prediction_example.ipynb -`_. +`_. To run the examples, download an archive of the `latest BrainIAK release from -GitHub `_. Note that we only +GitHub `_. Note that we only support the latest release at this moment, so make sure to upgrade your BrainIAK installation. @@ -135,9 +135,9 @@ starting contribution ideas. Please read the guide in `CONTRIBUTING.rst`_ first. .. _easy: - https://github.com/IntelPNI/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy + https://github.com/brainiak/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy .. _CONTRIBUTING.rst: - https://github.com/IntelPNI/brainiak/blob/master/CONTRIBUTING.rst + https://github.com/brainiak/brainiak/blob/master/CONTRIBUTING.rst Citing diff --git a/docs/newsfragments/274.removal b/docs/newsfragments/274.removal new file mode 100644 index 000000000..1ed3e7a5a --- /dev/null +++ b/docs/newsfragments/274.removal @@ -0,0 +1 @@ +Changed GitHub organization to BrainIAK. Update your remote URLs. diff --git a/docs/newsfragments/_template.jinja b/docs/newsfragments/_template.jinja index b171ecb3c..75a20b792 100644 --- a/docs/newsfragments/_template.jinja +++ b/docs/newsfragments/_template.jinja @@ -12,7 +12,7 @@ {% if definitions[category]['showcontent'] %} {% for text, values in sections[section][category]|dictsort(by='value') %} {% set issue_joiner = joiner(', ') %} -- {{ text }} ({% for value in values|sort %}{{ issue_joiner() }}`{{ value }} `_{% endfor %}) +- {{ text }} ({% for value in values|sort %}{{ issue_joiner() }}`{{ value }} `_{% endfor %}) {% endfor %} {% else %} From c32af6ef10781e61d6dfb1dc205256a1bd5fb5df Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mihai=20Capot=C4=83?= Date: Tue, 24 Oct 2017 09:54:34 -0700 Subject: [PATCH 2/2] Correct news fragment number --- docs/newsfragments/{274.removal => 277.removal} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename docs/newsfragments/{274.removal => 277.removal} (100%) diff --git a/docs/newsfragments/274.removal b/docs/newsfragments/277.removal similarity index 100% rename from docs/newsfragments/274.removal rename to docs/newsfragments/277.removal