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1. Commits on Aug 23, 2019

   • Threaded through dynamic_kwargs in cell list code.

     

     Sam Schoenholz

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   • Small fix due to JAX google/jax#1229.

     

     Sam Schoenholz

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   • Merge branch 'master' into grid_update

     

     sschoenholz

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   • Fixed issue where time passed to energy functions caused unexpected kwarg error.

     

     Sam Schoenholz

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2. Commits on Aug 22, 2019

   • Merge pull request #39 from mattjj/master

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     sschoenholz

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   • tweaks for new jax eval_shape api

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3. Commits on Aug 21, 2019

   • Merge pull request #38 from google/issue_36

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     sschoenholz

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   • Improved handling of dynamic potential parameters.

     

     Sam Schoenholz

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4. Commits on Aug 17, 2019

   • Refactor of cell lists along with updated tests.

     

     sschoenholz

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5. Commits on Aug 12, 2019

   • Updated jaxlib path in notebooks. (#35)

     

     sschoenholz

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6. Commits on Aug 6, 2019

   • Merge pull request #31 from google/batching_fix

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   • Fixed issue caused by JAX #912 where vmap does not work over kwargs.

     

     Sam Schoenholz

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7. Commits on Jun 17, 2019

   • Merge pull request #29 from google/notebook

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     sschoenholz

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   • Merge branch 'notebook' of https://github.com/google/jax-md into notebook

     

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   • Small fix to call simple_spring instead of spring.

     

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   • Merge pull request #28 from google/notebook

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   • Small fix to pairwise distance calculation.

     

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   • Moved errant minimization.ipynb back to notebooks.

     

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   • Merge pull request #27 from google/notebook

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   • Small fix to internal build for EAM test.

     

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   • Merge pull request #26 from google/notebook

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   • Merge branch 'notebook' of https://github.com/google/jax-md into notebook

     

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   • Added a bit more exposition on simple_spring potential.

     

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   • Added comment to explain vmap application.

     

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8. Commits on Jun 14, 2019

   • Fixed naming of soft_sphere_pairwise->soft_sphere_pair.

     

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   • Fixed naming of soft_sphere_pairwise->soft_sphere_pair.

     

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   • Fixed naming of soft_sphere_pairwise -> soft_sphere_pair.

     

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   • Added simple spring energy function.

     

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   • Fixed call to soft_sphere_pair in minimize.py

     

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   • Added preliminary version of bond mapping + tests.

     

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9. Commits on Jun 11, 2019

   • Changed function signature of displacement to act on vectors instead of sets of vectors.

     

     sschoenholz

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   • Merge pull request #25 from google/notebook

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   • Fix in FIRE minimization where n_pos was not being reset (#24). Fixed custom_transform call in response to JAX #818.

     

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   • Merge pull request #23 from google/notebook

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   • Small fix of dtype propagation in Nose-Hoover thermostat.

     

     Sam Schoenholz

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