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mihaic merged 2 commits into from
Oct 25, 2017
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dev: Change GitHub organization to BrainIAK #277

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dev: Change GitHub organization to BrainIAK
mihaic Oct 24, 2017
c32af6e
Correct news fragment number
mihaic Oct 24, 2017
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2 changes: 1 addition & 1 deletion CONTRIBUTING.rst
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Expand Up @@ -45,7 +45,7 @@ step-by-step description of our recommended workflow:

3. Add the official BrainIAK repository as the ``upstream`` remote::

git remote add upstream https://github.com/IntelPNI/brainiak
git remote add upstream https://github.com/brainiak/brainiak

4. Set the ``master`` branch to track the ``upstream`` remote::

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44 changes: 22 additions & 22 deletions NEWS.rst
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Expand Up @@ -9,27 +9,27 @@ Features
--------

- FCMA partial similarity matrix option. (`#168
<https://github.com/IntelPNI/brainiak/issues/168>`_)
<https://github.com/brainiak/brainiak/issues/168>`_)
- Faster FCMA cross validation via multiprocessing. (`#176
<https://github.com/IntelPNI/brainiak/issues/176>`_)
<https://github.com/brainiak/brainiak/issues/176>`_)
- Inter-subject correlation (ISC) and inter-subject functional correlation
(ISFC). (`#183 <https://github.com/IntelPNI/brainiak/issues/183>`_)
(ISFC). (`#183 <https://github.com/brainiak/brainiak/issues/183>`_)
- Input/output and image modules with high-level APIs. (`#209
<https://github.com/IntelPNI/brainiak/pull/209>`_)
<https://github.com/brainiak/brainiak/pull/209>`_)
- FCMA support for random permutations. (`#217
<https://github.com/IntelPNI/brainiak/issues/217>`_)
<https://github.com/brainiak/brainiak/issues/217>`_)
- A distributed version of SRM. (`#220
<https://github.com/IntelPNI/brainiak/issues/220>`_)
<https://github.com/brainiak/brainiak/issues/220>`_)
- Shape masks for the searchlight. (`#221
<https://github.com/IntelPNI/brainiak/issues/221>`_)
<https://github.com/brainiak/brainiak/issues/221>`_)


Deprecations and removals
-------------------------

- Changed fmrisim to compute signal-to-fluctuation-noise ratio (SFNR) instead
of signal-to-noise ratio (SNR). (`#224
<https://github.com/IntelPNI/brainiak/issues/224>`_)
<https://github.com/brainiak/brainiak/issues/224>`_)


BrainIAK 0.4 (2017-01-19)
Expand All @@ -39,12 +39,12 @@ Features
--------

- Distributed searchlight. (`#148
<https://github.com/IntelPNI/brainiak/issues/148>`_)
<https://github.com/brainiak/brainiak/issues/148>`_)
- Multi-voxel pattern analysis (MVPA) support in FCMA. (`#154
<https://github.com/IntelPNI/brainiak/issues/154>`_, `#157
<https://github.com/IntelPNI/brainiak/pull/157)>`_)
<https://github.com/brainiak/brainiak/issues/154>`_, `#157
<https://github.com/brainiak/brainiak/pull/157)>`_)
- Fast Pearson correlation coefficient computation. (`#159
<https://github.com/IntelPNI/brainiak/issues/159>`_)
<https://github.com/brainiak/brainiak/issues/159>`_)

BrainIAK 0.3.2 (2016-10-31)
===========================
Expand All @@ -53,9 +53,9 @@ Features
--------

- Faster event segmentation via Cython implementation. (`#111
<https://github.com/IntelPNI/brainiak/pull/111>`_)
<https://github.com/brainiak/brainiak/pull/111>`_)
- fMRI data simulator (fmrisim). (`#135
<https://github.com/IntelPNI/brainiak/pull/135>`_)
<https://github.com/brainiak/brainiak/pull/135>`_)


BrainIAK 0.3.1 (2016-09-30)
Expand All @@ -64,16 +64,16 @@ BrainIAK 0.3.1 (2016-09-30)
Features
--------

- Event segmentation. (`#72 <https://github.com/IntelPNI/brainiak/issues/72>`_)
- Event segmentation. (`#72 <https://github.com/brainiak/brainiak/issues/72>`_)
- Full correlation matrix analysis (FCMA). (`#97
<https://github.com/IntelPNI/brainiak/issues/97>`_, `#122
<https://github.com/IntelPNI/brainiak/pull/122>`_)
<https://github.com/brainiak/brainiak/issues/97>`_, `#122
<https://github.com/brainiak/brainiak/pull/122>`_)
- Bayesian representational similarity analysis (BRSA). (`#98
<https://github.com/IntelPNI/brainiak/issues/98>`_)
<https://github.com/brainiak/brainiak/issues/98>`_)
- Deterministic SRM. (`#102
<https://github.com/IntelPNI/brainiak/issues/102>`_)
<https://github.com/brainiak/brainiak/issues/102>`_)
- Semi-supervised shared response model (SSSRM). (`#108
<https://github.com/IntelPNI/brainiak/issues/108>`_)
<https://github.com/brainiak/brainiak/issues/108>`_)


BrainIAK 0.3 (2016-09-30) [YANKED]
Expand All @@ -87,14 +87,14 @@ Features
--------

- Hyperparameter optimization. (`#58
<https://github.com/IntelPNI/brainiak/pull/58>`_)
<https://github.com/brainiak/brainiak/pull/58>`_)


Deprecations and removals
-------------------------

- Removed ``_`` from package names. (`#73
<https://github.com/IntelPNI/brainiak/issues/73>`_)
<https://github.com/brainiak/brainiak/issues/73>`_)


BrainIAK 0.1 (2016-07-12)
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20 changes: 10 additions & 10 deletions README.rst
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@@ -1,12 +1,12 @@
Brain Imaging Analysis Kit
==========================

.. image:: https://travis-ci.org/IntelPNI/brainiak.svg?branch=master
:target: https://travis-ci.org/IntelPNI/brainiak
.. image:: https://travis-ci.org/brainiak/brainiak.svg?branch=master
:target: https://travis-ci.org/brainiak/brainiak

.. image:: https://badges.gitter.im/IntelPNI/brainiak.svg
:alt: Join the chat at https://gitter.im/IntelPNI/brainiak
:target: https://gitter.im/IntelPNI/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
.. image:: https://badges.gitter.im/brainiak/brainiak.svg
:alt: Join the chat at https://gitter.im/brainiak/brainiak
:target: https://gitter.im/brainiak/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge

The Brain Imaging Analysis Kit is a package of Python modules useful for
neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI)
Expand Down Expand Up @@ -99,7 +99,7 @@ Note that you may see a ``Failed building wheel for brainiak`` message (`issue
as long as you see ``Successfully installed`` at the end.

.. _issue #61:
https://github.com/IntelPNI/brainiak/issues/61
https://github.com/brainiak/brainiak/issues/61

Until we reach version 1.0, we will only support the latest released version.
Therefore, if you have a problem with an older version, please upgrade to the
Expand All @@ -110,10 +110,10 @@ Examples

We include BrainIAK usage examples in the examples directory of the code
repository, e.g., `funcalign/srm_image_prediction_example.ipynb
<https://github.com/IntelPNI/brainiak/blob/master/examples/funcalign/srm_image_prediction_example.ipynb>`_.
<https://github.com/brainiak/brainiak/blob/master/examples/funcalign/srm_image_prediction_example.ipynb>`_.

To run the examples, download an archive of the `latest BrainIAK release from
GitHub <https://github.com/IntelPNI/brainiak/releases>`_. Note that we only
GitHub <https://github.com/brainiak/brainiak/releases>`_. Note that we only
support the latest release at this moment, so make sure to upgrade your
BrainIAK installation.

Expand All @@ -135,9 +135,9 @@ starting contribution ideas. Please read the guide in `CONTRIBUTING.rst`_
first.

.. _easy:
https://github.com/IntelPNI/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy
https://github.com/brainiak/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy
.. _CONTRIBUTING.rst:
https://github.com/IntelPNI/brainiak/blob/master/CONTRIBUTING.rst
https://github.com/brainiak/brainiak/blob/master/CONTRIBUTING.rst


Citing
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1 change: 1 addition & 0 deletions docs/newsfragments/277.removal
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@@ -0,0 +1 @@
Changed GitHub organization to BrainIAK. Update your remote URLs.
2 changes: 1 addition & 1 deletion docs/newsfragments/_template.jinja
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Expand Up @@ -12,7 +12,7 @@
{% if definitions[category]['showcontent'] %}
{% for text, values in sections[section][category]|dictsort(by='value') %}
{% set issue_joiner = joiner(', ') %}
- {{ text }} ({% for value in values|sort %}{{ issue_joiner() }}`{{ value }} <https://github.com/IntelPNI/brainiak/issues/{{ value[1:] }}>`_{% endfor %})
- {{ text }} ({% for value in values|sort %}{{ issue_joiner() }}`{{ value }} <https://github.com/brainiak/brainiak/issues/{{ value[1:] }}>`_{% endfor %})
{% endfor %}

{% else %}
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