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initial commit of matrix normal base API , regression, and MN-RSA - #341

Merged

mihaic merged 90 commits into

brainiak:masterfrom

mshvartsman:matnormal-regression-rsa

Oct 13, 2020

Merged

initial commit of matrix normal base API , regression, and MN-RSA#341
mihaic merged 90 commits into
brainiak:masterfrom
mshvartsman:matnormal-regression-rsa

Commits on Mar 2, 2018
- initial commit of matrix normal base API , regression, and MNRSA
  Mike Shvartsman
  committed
  fb18dc2
Commits on Mar 5, 2018
- add tensorflow to requirements
  Mike Shvartsman
  committed
  94dfcbb
Commits on Mar 12, 2018
- make the linter happy
  Mike Shvartsman
  committed
  7264b3f
Commits on Mar 19, 2018
- Merge pull request #1 from brainiak/master
  narayanan2004
  authored
  aa54772
- Merge branch 'matnormal-regression-rsa' of https://github.com/mshvartsman/brainiak into matnormal-regression-rsa
  Narayanan Sundaram
  committed
  6e9fd68
Commits on Apr 2, 2018
- Fix style issues
  Narayanan Sundaram
  committed
  34087a7
Commits on Apr 3, 2018
- Merge branch 'master' into matnormal-regression-rsa
  mshvartsman
  authored
  4eb39f6
- Merge pull request #1 from narayanan2004/matnormal-regression-rsa
  mshvartsman
  authored
  6ab49df
- Merge branch 'matnormal-regression-rsa' of github.com:mshvartsman/brainiak into matnormal-regression-rsa
  Mike Shvartsman
  committed
  347cdc8
- more linter fixes
  Mike Shvartsman
  committed
  a75d866
- fix ambiguous varname
  Mike Shvartsman
  committed
  3dcf915
Commits on Apr 8, 2018
- linter fixes in tests
  Mike Shvartsman
  committed
  e9da333
- broke this to make the linter happy, fixing
  Mike Shvartsman
  committed
  5ae24f1
Commits on Apr 9, 2018
- more cleanup from hacky copypaste-squash
  Mike Shvartsman
  committed
  01aed20
- More linter checks (for some reason run-checks.sh ignores /tests on my machine)
  Mike Shvartsman
  committed
  9ca2cef
- fixing sphinx complaints
  Mike Shvartsman
  committed
  9ee9734
Commits on Apr 16, 2018
- Merge remote-tracking branch 'upstream/master' into matnormal-regression-rsa
  Mike Shvartsman
  committed
  39fbc3b
Commits on Jul 18, 2019
- sync with upstream
  mshvartsman
  committed
  e72998d
- move kronecker solvers to their own file, utils.py was getting unwieldy
  mshvartsman
  committed
  56cc6c8
Commits on Jan 1, 2020
- initial refactor, all tests pass
  mshvartsman
  committed
  e5a2e94
- remove CovTFWrap, use constant cholesky cov with passed Sigma instead
  mshvartsman
  committed
  bb57f74
- linter and formatting fixes
  mshvartsman
  committed
  1ee89b3
Commits on Jan 2, 2020
- merge upstream
  mshvartsman
  committed
  835558a
Commits on Jan 8, 2020
- add metaclass reference
  mshvartsman
  committed
  231391b
- further cleanup post refactor, doc changes, addressing minor comments
  mshvartsman
  committed
  d2bb285
Commits on Mar 2, 2020
- Merge remote-tracking branch 'upstream/master' into matnormal-regression-rsa
  mshvartsman
  committed
  af2e0ac
- linter and deprecation fixes, rename Matnorm to Matnormal in one spot
  mshvartsman
  committed
  79092ee
Commits on Mar 3, 2020
- fix missing comma
  mshvartsman
  committed
  1fedd0c
- strict linter fixes
  mshvartsman
  committed
  87eb10d
- need old TF for things to work
  mshvartsman
  committed
  bc87a00
- docstring formatting fix
  mshvartsman
  committed
  05258b3
Commits on Jun 30, 2020
- run tf1 -> tf2 conversion script
  mshvartsman
  committed
  c362426
- run v1 -> v2 conversion on tests
  mshvartsman
  committed
  16bf442
- tf 1 -> 2 on solvers
  mshvartsman
  committed
  e4f28d6
- test_cov passes
  mshvartsman
  committed
  dea4d10
- logp tests pass
  mshvartsman
  committed
  a5b2c7e
Commits on Jul 27, 2020
- cov tests pass eager
  mshvartsman
  committed
  d82a1b6
- matnorm test passes in eager
  mshvartsman
  committed
  b0eb0c6
- rest of likelihoods pass in eager
  mshvartsman
  committed
  0ba7509
Commits on Aug 5, 2020
- pack/unpack for fitting using scipy
  mshvartsman
  committed
  1ec4425
- do cholesky covs better now
  mshvartsman
  committed
  d032b1a
- test for new packing/unpacking utils
  mshvartsman
  committed
  ed63f6d
- tests now pass eager mode
  mshvartsman
  committed
  1db0080
- pull out repeated code as a util
  mshvartsman
  committed
  b134a05
- Follow more standard sklearn API where est params come out as trailing underscore
  mshvartsman
  committed
  7ffbe91
- mnrsa now works with eager, tests pass
  mshvartsman
  committed
  9a6b4b7
- final removal of tf print and session stuff
  mshvartsman
  committed
  b041460
Commits on Aug 6, 2020
- typo fixes
  mshvartsman
  committed
  cee8c81
- likelihood docstrings
  mshvartsman
  committed
  6e95082
- simplify make_val_and_grad
  mshvartsman
  committed
  12eff1f
- fix old tf1 stuff that would break in tf2
  mshvartsman
  committed
  41eda2b
- fix for maintaining the graph correctly
  mshvartsman
  committed
  3f6dde5
- More stringent tests by doing bad initialization
  mshvartsman
  committed
  429e329
- Update example with new way of doing things
  mshvartsman
  committed
  ad6ce7d
- final typo fixes
  mshvartsman
  committed
  a1fa69e
- Merge branch 'mnorm-eager' into matnormal-regression-rsa
  mshvartsman
  committed
  dca4b51
- autoformat
  mshvartsman
  committed
  ee57283
- remove nb_black dependency
  mshvartsman
  committed
  0cf0a77
Commits on Aug 14, 2020
- minor docstring cleanup
  mshvartsman
  committed
  d3c0a5a
- fix the kron covs to work correctly with the new optimizer wrapper
  mshvartsman
  committed
  73d2945
- autoformat
  mshvartsman
  committed
  98607ea
- correctly pass optimizer args
  mshvartsman
  committed
  4fcf557
- Make test linter happy
  mshvartsman
  committed
  a1fe394
- Merge branch 'master' into matnormal-regression-rsa
  mshvartsman
  committed
  39646f7
- maybe this will make travis use a recent TF?
  mshvartsman
  committed
  495c656
Commits on Aug 15, 2020
- workaround to be able to use pymanopt (for theano) in the presence of TF>1
  mshvartsman
  committed
  c9a5688
Commits on Aug 18, 2020
- Merge branch 'master' into matnormal-regression-rsa (pull in tf2.3 fixes)
  mshvartsman
  committed
  c599f92
Commits on Aug 22, 2020
- doc build fixes
  mshvartsman
  committed
  570f4a2
- doc cleanup and removal of unused functions
  mshvartsman
  committed
  5f04a82
- fix linter issues introduced by fixing docbuild issues
  mshvartsman
  committed
  8a41b9d
- remove hard tf2.3 requirement (tensorflow_probability deps should resolve this automatically)
  mshvartsman
  committed
  b77ddf3
- add reproducible rng fixture, improve test coverage, fixup linear decoding
  mshvartsman
  committed
  c0af0e6
- don't print debug on tests, improve cov
  mshvartsman
  committed
  6250fc8
- improve coverage
  mshvartsman
  committed
  3dfec38
- docstring cleanups
  mshvartsman
  committed
  549bf2a
- notation consistency fix for the example too
  mshvartsman
  committed
  d0da34c
Commits on Aug 25, 2020
- addressing @mihaic's comments
  mshvartsman
  committed
  0022cc7
Commits on Aug 31, 2020
- make cholesky flat/unflat use consistently TF ops
  mshvartsman
  committed
  1887a80
- float comparison
  mshvartsman
  committed
  78a13a2
Commits on Sep 1, 2020
- revert whitespace change
  mshvartsman
  committed
  55296e8
- fix conda build for travis
  mshvartsman
  committed
  4e0397a
- more conda build fixes
  mshvartsman
  committed
  3413d90
- whitespace
  mshvartsman
  committed
  7d983da
Commits on Sep 2, 2020
- pull in TF2.3 from PyPI since conda only has 2.2
  mshvartsman
  committed
  f9f595e
Commits on Sep 3, 2020
- escape
  mshvartsman
  committed
  9e60f23
Commits on Sep 25, 2020
- Fix tensorflow-probability dependencies
  mihaic
  committed
  5e472a1
Commits on Oct 9, 2020
- Make matnormal optional
  mihaic
  committed
  6894f94
- Add tensorflow dependency, docs
  mihaic
  committed
  845ca84
Commits on Oct 13, 2020
- Change dependencies installation instructions
  mihaic
  committed
  0da0201
- Merge branch 'master' into matnormal-regression-rsa
  mihaic
  committed
  c55e963

Commits

Commits on Mar 2, 2018

Commits on Mar 5, 2018

Commits on Mar 12, 2018

Commits on Mar 19, 2018

Commits on Apr 2, 2018

Commits on Apr 3, 2018

Commits on Apr 8, 2018

Commits on Apr 9, 2018

Commits on Apr 16, 2018

Commits on Jul 18, 2019

Commits on Jan 1, 2020

Commits on Jan 2, 2020

Commits on Jan 8, 2020

Commits on Mar 2, 2020

Commits on Mar 3, 2020

Commits on Jun 30, 2020

Commits on Jul 27, 2020

Commits on Aug 5, 2020

Commits on Aug 6, 2020

Commits on Aug 14, 2020

Commits on Aug 15, 2020

Commits on Aug 18, 2020

Commits on Aug 22, 2020

Commits on Aug 25, 2020

Commits on Aug 31, 2020

Commits on Sep 1, 2020

Commits on Sep 2, 2020

Commits on Sep 3, 2020

Commits on Sep 25, 2020

Commits on Oct 9, 2020

Commits on Oct 13, 2020