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WIP: Revamped ISC analyses with additional statistical tests - #384

Merged

snastase merged 46 commits into

brainiak:masterfrom

snastase:isc-stats

Dec 7, 2018

Merged

WIP: Revamped ISC analyses with additional statistical tests#384
snastase merged 46 commits into
brainiak:masterfrom
snastase:isc-stats

Commits on Sep 24, 2018
Commits on Sep 28, 2018
- Moved non-pairwise operations out of voxel loop for speed
  snastase
  committed
  d949b0b
Commits on Oct 2, 2018
- Added permutation test for one- and two-sample tests
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  committed
  be76561
- Added function for circular time-shift randomization test
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  25b2e73
- Fixed time-shift to only shift test subject in leave-one-out
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  committed
  decfbf9
- New phase randomization test, both pairwise and leave-one-out
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  511afd2
- Revamped ISFC with no internal stats (no pairwise yet)
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  169c9db
Commits on Oct 3, 2018
- Added pairwise option to ISFC, fixed inputs to compute_correlation
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  be46bf5
Commits on Oct 4, 2018
Commits on Oct 6, 2018
Commits on Nov 8, 2018
- Added function in utils to get p-value from null distribution
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  8901841
Commits on Nov 9, 2018
Commits on Nov 11, 2018
- MaskedMultiSubjectData shape now n_TRs, n_voxels, n_subjects
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  d05338d
- Separate mini-functions for checking ISC input assumptions
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  180edca
- Added Q as co-author on ISC package
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  5c86ec0
- Merge branch 'master' into isc-stats
  snastase
  authored
  39ba709
Commits on Nov 19, 2018
Commits on Dec 5, 2018
- Fixed installation error, removed crud
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  36b194d
- Removed f-strings to please travis .·´¯·.
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  1f0546c
- Merge branch 'isc-stats' of https://github.com/snastase/brainiak into isc-stats
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  8c06952
- Re-added 'isfc' module with deprecation warning
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  342d14f
Commits on Dec 6, 2018
- New smaller permutation_isc functions to reduce complex
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  7a58b31
- Fixed test_images.py for new MMSD shape
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  5bbafe9
- Set tolerance for allclose in ISC/ISFC test comparison
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  196b94d
- Fixed dedent in docstring refs for html rendering
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  d2e00a2
- Removed deprecated isfc.py entirely, fixed [Chen2016]
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  38530a3
- Removed duplicate Simony reference in phaseshift_isc
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  04c7734
- Fixed references and added doi URLs
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  3a5a0d8
Commits on Dec 7, 2018
- Updated example with current ISC code
  snastase
  committed
  a39f0b8
- Changed test_isc_output to allclose with some tolerance
  snastase
  committed
  bae11b6

Commits

Commits on Sep 24, 2018

Commits on Sep 28, 2018

Commits on Oct 2, 2018

Commits on Oct 3, 2018

Commits on Oct 4, 2018

Commits on Oct 6, 2018

Commits on Nov 8, 2018

Commits on Nov 9, 2018

Commits on Nov 11, 2018

Commits on Nov 19, 2018

Commits on Dec 5, 2018

Commits on Dec 6, 2018

Commits on Dec 7, 2018