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Notebook testing - #511

Merged

mihaic merged 99 commits into

brainiak:masterfrom

davidt0x:notebook_testing

Oct 3, 2023

Merged

Notebook testing#511
mihaic merged 99 commits into
brainiak:masterfrom
davidt0x:notebook_testing

Commits on Sep 3, 2021
- Added version of pr-check for running on della
  davidt0x
  committed
  105f9b6
Commits on Jan 24, 2022
- Added example notebook tests
  davidt0x
  committed
  2d25298
- Disable notebook building from docs for now.
  davidt0x
  committed
  0e0b5cd
Commits on Feb 7, 2022
- Fix some issues with notebook tests
  davidt0x
  committed
  2f70417
- increase job time on della tests
  davidt0x
  committed
  c63caab
- Add log message for running notebook tests
  davidt0x
  committed
  015ce02
- more fixes
  davidt0x
  committed
  5b92e42
Commits on Feb 21, 2022
- Fixes some bugs on della's new head node
  davidt0x
  committed
  e0a745b
- fix some style errors
  davidt0x
  committed
  b283f0a
- Added type: ignore for pkg_resources
  davidt0x
  committed
  e5d68ea
Commits on Mar 7, 2022
- Get rid of install of types-pkg-resources
  davidt0x
  committed
  fa864b2
- Remove numpy pin
  davidt0x
  committed
  bc78098
- replace some references to np.bool with bool
  davidt0x
  committed
  e179634
- fix type error in test_image.py:129
  davidt0x
  committed
  014e0b4
- Fix syntax error in pr-check.sh
  davidt0x
  committed
  c4a5494
Commits on Mar 21, 2022
- workaround for newer numpy and theano
  davidt0x
  committed
  0cb0adc
- pin statsmodel<=0.12
  davidt0x
  committed
  d30b4e5
- Convert comparison to np.allclose
  davidt0x
  committed
  9e06236
- fix the statsmodel issue with deprecated ARMA
  davidt0x
  committed
  e6fceaf
- fixed deprectaion warning for ndimage
  davidt0x
  committed
  fadc914
- swap np.matlib.repmat for np.tile becuase of deprecation
  davidt0x
  committed
  12921d6
- fix ref to moved example iem_example_synthetic_RF_data
  davidt0x
  committed
  fb5647b
- add python 3.9 and 3.10 testing, add testbook req
  davidt0x
  committed
  0930055
- fix python version specifiers to string in ci
  davidt0x
  committed
  83a170a
Commits on Apr 4, 2022
- Attempted fixes for conda build and doc generation
  davidt0x
  committed
  9a6e1f4
- Convert embedded image in notebook to non-embedded.
  davidt0x
  committed
  f9a992b
- More warnings fixed on notebooks.
  davidt0x
  committed
  2eb5ff8
- small change to test CI on master.
  davidt0x
  committed
  98a5464
- Update main.yml
  davidt0x
  authored
  52719e7
Commits on Jul 25, 2022
- Some packaging changes
  davidt0x
  committed
  fe8788b
- Add version cap for pymanopt, new version breaks things.
  davidt0x
  committed
  cf30127
- Remove typing-extensions and dataclasses dependencies. Not needed.
  davidt0x
  committed
  243efdc
- Fix some numpy type decprecation warnings.
  davidt0x
  committed
  709035e
Commits on Aug 8, 2022
- Fix some code style errors.
  davidt0x
  committed
  53078a0
- More code style fixes
  davidt0x
  committed
  d623422
- More codestyle fixes.
  davidt0x
  committed
  5cbcd64
- More code style fixes in tests
  davidt0x
  committed
  85cec10
- More style fixes in tests
  davidt0x
  committed
  41f9a2c
- Fix exclusion of pymanopt in conda build
  davidt0x
  committed
  6d734dc
- Specify engilish language for docs
  davidt0x
  committed
  372fff0
- Change 'jupyter_execute_notebooks' to 'nb_execution_mode'.
  davidt0x
  committed
  d3be6e4
- Fix Myst-NB config deprecation
  mihaic
  committed
  fe8755e
Commits on Aug 9, 2022
- Another Myst-NB config deprecation fix
  mihaic
  committed
  230d61e
- Suppress Myst-NB Holoviews warning
  mihaic
  committed
  7c20622
Commits on Aug 10, 2022
- Fix Myst warnings
  mihaic
  committed
  02ff296
Commits on Sep 19, 2022
- Add setup requires dependencies to meta.yaml host
  davidt0x
  committed
  d7e9e8a
- Merge branch 'notebook_testing' of https://github.com/davidt0x/brainiak into notebook_testing
  davidt0x
  committed
  259f607
- Add use_scm_version=True to setup.cfg
  davidt0x
  committed
  a242774
- Fix syntax for setting mypy github repo as dep
  davidt0x
  committed
  177bd52
- Pin pymanopt install in .conda/buiild.sh like in install_requires
  davidt0x
  committed
  bcc2e87
- fix pymanopt pin
  davidt0x
  committed
  c795813
Commits on Sep 26, 2022
- Remove mypy workaround
  mihaic
  authored
  aa97190
Commits on Oct 17, 2022
- Mark rtcloud and MPI notebooks as skip
  davidt0x
  committed
  16f067b
- Merge branch 'notebook_testing' of https://github.com/davidt0x/brainiak into notebook_testing
  davidt0x
  committed
  6ceed5f
Commits on Oct 31, 2022
- Disable matrix-normal notebook test.
  davidt0x
  committed
  219880d
- Remove code for checking "std=c++11" flags
  davidt0x
  committed
  ace6f6a
- Remove extra parentheses.
  davidt0x
  committed
  725f799
- Fix indent error
  davidt0x
  committed
  46223d3
- Fix style
  davidt0x
  committed
  ce10f21
- Fix clang paths
  davidt0x
  committed
  dc621ad
- Fix clang path to be version 14
  davidt0x
  committed
  cfc8dfb
- Fix syntax error
  davidt0x
  committed
  227eeeb
Commits on Nov 1, 2022
- Fix syntax error and black format
  davidt0x
  committed
  89e95d6
- Run black with 80 for line length limit.
  davidt0x
  committed
  74ed4f3
- type: ignore to line in test_notebooks.py
  davidt0x
  committed
  7c200d2
- Fix some mypy issues.
  davidt0x
  committed
  3a29dba
Commits on Mar 6, 2023
- Add new workflow for running notebook tests
  davidt0x
  committed
  7c26a22
- Dont setup python on della, use anaconda module.
  davidt0x
  committed
  32828e6
Commits on Mar 20, 2023
- Fix reference to llvm@14
  davidt0x
  committed
  35f0f3c
- Fix deprecated call to get_data()
  davidt0x
  committed
  f6a638a
- Rename workflow step.
  davidt0x
  committed
  60efa07
- Some changes to pr-check.sh for notebook tests
  davidt0x
  committed
  e50a432
Commits on May 15, 2023
- Merge branch 'master' of https://github.com/davidt0x/brainiak into notebook_testing
  davidt0x
  committed
  212ddb3
- Convert calls from get_data() to get_fdatat()
  davidt0x
  committed
  b151709
Commits on May 16, 2023
- Disable SRM notebook test for now.
  davidt0x
  committed
  b7d4f54
- Add dtype=float for Nifti1Pair image creation.
  davidt0x
  committed
  9a66139
- Another get_data() to get_fdata() fix.
  davidt0x
  committed
  7798442
- Disable doc build on della
  davidt0x
  committed
  254f6fc
- Set IGNORE_CONDA false on della
  davidt0x
  committed
  408c4cb
- Delete IGNOR_CONDA
  davidt0x
  committed
  07a061f
- Change license_file to license_files
  davidt0x
  committed
  aa55f15
- Fix to find clang on macos
  davidt0x
  committed
  5d3a349
- Add concurrency constraints to workflows
  davidt0x
  committed
  a7135ae
- Codestyle fix
  davidt0x
  committed
  c749662
- Install OpenMP for macos.
  davidt0x
  committed
  1cffdc9
- Add include and lib dirs for omp
  davidt0x
  committed
  cab7f57
Commits on May 17, 2023
- Bunch of mypy fixes
  davidt0x
  committed
  834c41d
- Remove install of omp on MacOS.
  davidt0x
  committed
  ca755ed
Commits on Aug 7, 2023
- Added a some documentation
  davidt0x
  committed
  0ec46dd
- Add new errors to flake8 ignore
  davidt0x
  committed
  2f4d080
- Add flake8 ignores for tests as well.
  davidt0x
  committed
  fdd7c17
- Pin tensorflow to fix problems with tf probability
  davidt0x
  committed
  af97896
- Move TMPDIR to scratch on della.
  davidt0x
  committed
  b05a7d7
- Attempt to fix doc build error
  davidt0x
  committed
  a2b7f55
- Disable -W on Sphinx
  davidt0x
  committed
  1667879
Commits on Sep 5, 2023
- Disable conda build on Mac for now, testing.
  davidt0x
  committed
  fb5744e
Commits on Oct 2, 2023
- Fixes for building conda packages.
  vineetbansal
  committed
  576050f
Commits on Oct 3, 2023
- Pinning numpy<=1.23.1 seems to resolve SRM issues.
  vineetbansal
  committed
  4d40347
- Fix the numpy pin
  vineetbansal
  committed
  e51f057

Commits

Commits on Sep 3, 2021

Commits on Jan 24, 2022

Commits on Feb 7, 2022

Commits on Feb 21, 2022

Commits on Mar 7, 2022

Commits on Mar 21, 2022

Commits on Apr 4, 2022

Commits on Jul 25, 2022

Commits on Aug 8, 2022

Commits on Aug 9, 2022

Commits on Aug 10, 2022

Commits on Sep 19, 2022

Commits on Sep 26, 2022

Commits on Oct 17, 2022

Commits on Oct 31, 2022

Commits on Nov 1, 2022

Commits on Mar 6, 2023

Commits on Mar 20, 2023

Commits on May 15, 2023

Commits on May 16, 2023

Commits on May 17, 2023

Commits on Aug 7, 2023

Commits on Sep 5, 2023

Commits on Oct 2, 2023

Commits on Oct 3, 2023