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Fcma - #97

Merged

mihaic merged 63 commits into

brainiak:masterfrom

yidawang:fcma

Sep 22, 2016

Merged

Fcma#97
mihaic merged 63 commits into
brainiak:masterfrom
yidawang:fcma

Commits on Aug 17, 2016
- add CMake support to the isntallation
  yidawang
  committed
  08764d3
- initialize fcma
  yidawang
  committed
  17ab76a
Commits on Aug 24, 2016
Commits on Aug 25, 2016
- fix a bug in Fisher Transformation
  yidawang
  committed
  7b69c76
- use C++ to do within-subject normalization, add running example
  yidawang
  committed
  70c653d
- check compiler type in CMake
  yidawang
  committed
  1bb5282
Commits on Aug 26, 2016
- enable finding blas library/MKL in different OSes
  yidawang
  committed
  7cbad63
- use new data structure to depict epoch infomation, add an example epoch cube list
  yidawang
  committed
  b9f4d9c
- simplify the fcma example, encapsulate MPI communicatation
  yidawang
  committed
  54da6f0
- broadcast the data subject by subject to prevent size overflow
  yidawang
  committed
  d9ea112
- minor bug fix in fcma example
  yidawang
  committed
  38db4e3
Commits on Aug 28, 2016
- formalize comments
  yidawang
  committed
  3935570
Commits on Aug 29, 2016
- impose scikit-learn svm cross validation to use all CPUs
  yidawang
  committed
  aab70df
- tiny bug fixed in the worker output
  yidawang
  committed
  67d97d1
Commits on Aug 30, 2016
- change to column major in preparation for using BLAS APIs under SciPy Cython wrapper
  yidawang
  committed
  d0af529
- change the input data to row-major
  yidawang
  committed
  55565af
- minor bugs fixed
  yidawang
  committed
  29f6d47
- use blas wrapper by scipy cython
  yidawang
  committed
  044d34c
- format output
  yidawang
  committed
  849a061
Commits on Aug 31, 2016
- add in classifier flexibility, use regular compiling for fcma_extension, format the code
  yidawang
  committed
  2bdd569
Commits on Sep 1, 2016
Commits on Sep 7, 2016
- use logging instead of print
  yidawang
  committed
  45936ee
- formatting
  yidawang
  committed
  a009225
Commits on Sep 8, 2016
- add extra link flag for cython compiling under MKL
  yidawang
  committed
  5bd0fa3
- add compiler specific links to cython compiling
  yidawang
  committed
  7f822fa
Commits on Sep 9, 2016
- make master rank selectable for better coverage in testing
  yidawang
  committed
  7699260
- make the test example conciser, delete the example epoch data
  yidawang
  committed
  b1cdbd2
Commits on Sep 10, 2016
- better c compiler detection in the pyxbld file
  yidawang
  committed
  926cb66
- compile cython_blas in __init__.py using only one process, no need to sleep in pr-check before py.test
  yidawang
  committed
  1365da8
Commits on Sep 14, 2016
- Merge remote-tracking branch 'upstream/master' into fcma
  yidawang
  committed
  af31649
Commits on Sep 16, 2016
- add run-tests.sh back
  yidawang
  committed
  f35f03d
- add run-tests.sh back
  yidawang
  committed
  1260a42
- chmod of run-tests.sh
  yidawang
  committed
  b5f2c0e
- remove cmake related info for this PR
  yidawang
  committed
  9e47e15
Commits on Sep 17, 2016
- restore original setup.py and address other review comments
  yidawang
  committed
  a77b51f
- add fcma extension back
  yidawang
  committed
  8f510f7
- fortmatting issue
  yidawang
  committed
  44225eb
Commits on Sep 19, 2016
- copy *pyxbld files when installing
  yidawang
  committed
  f65f6c8
Commits on Sep 20, 2016
- Compile Cython code during install, not at runtime
  mihaic
  committed
  ef554a2
- Merge pull request #5 from mihaic/fcma-compile-at-install
  yidawang
  authored
  0343ade
Commits on Sep 21, 2016
- only add c++11/14 to C++ extension compiling; check correctness in FCMA tests
  yidawang
  committed
  0b7b078
- explicitly specify language for each extension
  yidawang
  committed
  5eadef1
- use == to check if two strings equal
  yidawang
  committed
  39f9f07
- set icc flags to c_opts correctly
  yidawang
  committed
  031d5fb
- detect extension language in a smarter way; let fcma test code read in data files
  yidawang
  committed
  3d86e86
- use deep copy to assign compiling flags
  yidawang
  committed
  f862c9b
- switch the test sequence
  yidawang
  committed
  f75d9f7
- make kernel matrix scale setting adjustable to the initial values; remove file reading in fcma test
  yidawang
  committed
  257882d
- tolerate one sample error in cross validation
  yidawang
  committed
  3f14b80
- delete unnecessary data file; improve fcma test coverage
  yidawang
  committed
  9a3f00b
- add logistic regression to fcma test
  yidawang
  committed
  03c6957
- rename the code file in fcma example
  yidawang
  committed
  e4823b1
- Merge remote-tracking branch 'upstream/master' into fcma
  yidawang
  committed
  d0204ab

Commits

Commits on Aug 17, 2016

Commits on Aug 24, 2016

Commits on Aug 25, 2016

Commits on Aug 26, 2016

Commits on Aug 28, 2016

Commits on Aug 29, 2016

Commits on Aug 30, 2016

Commits on Aug 31, 2016

Commits on Sep 1, 2016

Commits on Sep 7, 2016

Commits on Sep 8, 2016

Commits on Sep 9, 2016

Commits on Sep 10, 2016

Commits on Sep 14, 2016

Commits on Sep 16, 2016

Commits on Sep 17, 2016

Commits on Sep 19, 2016

Commits on Sep 20, 2016

Commits on Sep 21, 2016