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Add Bayesian RSA to the package (reprsimil) - #98

Merged

mihaic merged 63 commits into

brainiak:masterfrom

lcnature:add_brsa

Sep 22, 2016

Merged

Add Bayesian RSA to the package (reprsimil)#98
mihaic merged 63 commits into
brainiak:masterfrom
lcnature:add_brsa

Commits on Sep 2, 2016
- a
  lcnature
  committed
  e4ab872
- deleted: brsa/test.txt
  lcnature
  committed
  06c869a
- return to origin
  lcnature
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  45f5627
Commits on Sep 5, 2016
- improving codes to past test
  lcnature
  committed
  39441a9
Commits on Sep 6, 2016
- more changes in brsa.py to fit testing requirements
  lcnature
  committed
  762735b
- keep removing trailing whitespace and reducing complexity :)
  lcnature
  committed
  00ed548
Commits on Sep 7, 2016
- passed brainiak test, ready for pull request. There is no example yet.
  lcnature
  committed
  1465422
- URL for preprint added
  lcnature
  committed
  f77e4a2
- Added note to warn about the assumption of spatial independence of noise
  lcnature
  committed
  e4ff88f
- removed trailing whitespace
  lcnature
  committed
  b0fc653
Commits on Sep 8, 2016
- some updates to docstring. But it still seems to have problem
  lcnature
  committed
  8b7232a
- Added a test for read_design in utils.py. Corrected the docstring error (hopefully)
  lcnature
  committed
  e84cd76
- fixed a mistake of the standard deviation of Gaussian Process
  lcnature
  committed
  79da035
- reversed some unintended change to utils.py
  lcnature
  committed
  1f5775a
Commits on Sep 11, 2016
- modified: brainiak/reprsimil/brsa.py
  lcnature
  committed
  72993e0
Commits on Sep 12, 2016
- modified: brainiak/reprsimil/brsa.py
  lcnature
  committed
  df1212f
Commits on Sep 13, 2016
- intermittant push. A few suggestions by Mike are fixed: distance for GP, naming of variables etc. More to commit later
  lcnature
  committed
  feffa12
- fixing formatting errors
  lcnature
  committed
  33d1230
- fixed some errors of the previous commit
  lcnature
  committed
  2e62141
Commits on Sep 15, 2016
- The 3 steps of fitting are now separated into 3 functions. Additionally, half-Cauchy prior is now imposed on the standard deviation of GP as well. This avoids a risk of converging to huge length sc…
  lcnature
  committed
  cd92ca8
Commits on Sep 16, 2016
- minor change to test code
  lcnature
  committed
  4a17697
- minor change to test code
  lcnature
  committed
  e18827b
- minor changes to some ocmments
  lcnature
  committed
  54b23cb
- Merge branch 'master' into add_brsa
  lcnature
  authored
  890dc15
Commits on Sep 19, 2016
- Added more documentation in utils.read_design and reprsimil.brsa. Reduced the tolerance for gradient test of brsa.
  lcnature
  committed
  54e8035
- minor update to comments in brsa.py
  lcnature
  committed
  048b6c8
- Merge branch 'add_brsa' of https://github.com/lcnature/brainiak into add_brsa
  lcnature
  committed
  08eb888
- Merge branch 'master' into add_brsa
  lcnature
  authored
  f189941
- improving codes to past test
  lcnature
  committed
  787020d
- more changes in brsa.py to fit testing requirements
  lcnature
  committed
  99aa7c2
- keep removing trailing whitespace and reducing complexity :)
  lcnature
  committed
  4b58738
- passed brainiak test, ready for pull request. There is no example yet.
  lcnature
  committed
  d67008b
- URL for preprint added
  lcnature
  committed
  5350ddc
- Added note to warn about the assumption of spatial independence of noise
  lcnature
  committed
  063a0c1
- removed trailing whitespace
  lcnature
  committed
  f77e228
- some updates to docstring. But it still seems to have problem
  lcnature
  committed
  99dcd7c
- Added a test for read_design in utils.py. Corrected the docstring error (hopefully)
  lcnature
  committed
  dc57582
- fixed a mistake of the standard deviation of Gaussian Process
  lcnature
  committed
  b56a476
- reversed some unintended change to utils.py
  lcnature
  committed
  4dd6091
- modified: brainiak/reprsimil/brsa.py
  lcnature
  committed
  374cf64
- modified: brainiak/reprsimil/brsa.py
  lcnature
  committed
  19f76ff
- intermittant push. A few suggestions by Mike are fixed: distance for GP, naming of variables etc. More to commit later
  lcnature
  committed
  c61db99
- fixing formatting errors
  lcnature
  committed
  7d7254f
- fixed some errors of the previous commit
  lcnature
  committed
  dc441a3
- Use logging in SRM (#100)
  
  Javier Turek
  authored and
  lcnature
  committed
  c524178
- Call `git clean` for docs before building
  
  mihaic
  authored and
  lcnature
  committed
  8d5128b
- The 3 steps of fitting are now separated into 3 functions. Additionally, half-Cauchy prior is now imposed on the standard deviation of GP as well. This avoids a risk of converging to huge length sc…
  lcnature
  committed
  92de13a
- minor change to test code
  lcnature
  committed
  607f371
- minor change to test code
  lcnature
  committed
  d8d3a9f
- minor changes to some ocmments
  lcnature
  committed
  2ff640e
- Added more documentation in utils.read_design and reprsimil.brsa. Reduced the tolerance for gradient test of brsa.
  lcnature
  committed
  19e5ce9
- minor update to comments in brsa.py
  lcnature
  committed
  9c8b0da
- reducing perturbation for gradient test
  lcnature
  committed
  cbdfd76
- trying to solve divergence
  lcnature
  committed
  b174e7d
- updating test code
  lcnature
  committed
  d927f19
- delete temporary files
  lcnature
  committed
  f5cf7cf
- use numdifftools for gradient testing in brsa
  lcnature
  committed
  59ada9c
- use numdifftools for gradient testing in brsa
  lcnature
  committed
  9b1e30a
- use numdifftools for gradient testing in brsa
  lcnature
  committed
  68a4600
Commits on Sep 20, 2016
- correcting some comments and deleting some old codes
  lcnature
  committed
  b8fa72a
- changing some parameters in test script to see why travis-CI fails
  lcnature
  committed
  00403b8
Commits on Sep 21, 2016
- naming change to utils.ReadDesign and a few functions in BRSA
  lcnature
  committed
  3f5933f
Commits on Sep 22, 2016
- Merge branch 'master' into add_brsa
  lcnature
  authored
  6884290

Commits

Commits on Sep 2, 2016

Commits on Sep 5, 2016

Commits on Sep 6, 2016

Commits on Sep 7, 2016

Commits on Sep 8, 2016

Commits on Sep 11, 2016

Commits on Sep 12, 2016

Commits on Sep 13, 2016

Commits on Sep 15, 2016

Commits on Sep 16, 2016

Commits on Sep 19, 2016

Commits on Sep 20, 2016

Commits on Sep 21, 2016

Commits on Sep 22, 2016