Stars
ripgrep recursively searches directories for a regex pattern while respecting your gitignore
100% offline, open-source, Voice Dictation app on any OS
High-performance UMI tools for NGS data analysis
Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout
A differentiable model of nucleic acid dynamics
Blazing-Fast Bioinformatic Operations on Python DataFrames
Template repository for HOOMD-blue C++ components.
A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.
A simple command line tool to wrap blender 2.8+ as a jupyter kernel.
This repository hosts a minimal version of a Python API for BPNet.
Processing and plotting tools for genomics data
Python implementation of Chatterjee's Rank Correlation, its modifications, and other offshoots
The detection of peaks and valleys in a 1d-vector or 2d-array (image)
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
A coding agent for open models like Kimi K3 and GLM 5.3
⚡ A Fast, Extensible Progress Bar for Python and CLI
Genomic interval operations on Pandas DataFrames
Oxbow makes genomic data ready for high-performance analytics.