Simple Standard for Sharing Ontology Mappings

A fast, parallel Rust implementation of CRISPRCasFinder, a tool for identifying CRISPR arrays and Cas proteins in genomic sequences.

PhotoCraft: An open-source photo editor written from scratch in pure Rust

Craft Anything: understand how any software works, and craft your own.

VectorCraft: An open-source vector art tool written from scratch in pure Rust

A Game Boy Advance emulator that only reads FASTA genomic files

A genome diagram generator for microbes and organelles

Skills & reviewer agents for AI-first climate science — built and used by a PhD atmospheric scientist

Automated environmental annotation of marine metagenomic samples

Metalink: Joint taxonomic and functional profiling of metagenomes and metatranscriptomes across resolution scales.

Metagenomic assembly graph gene neighbourhood extraction tool

Identification of differential RNA modifications from nanopore direct RNA sequencing

A gap-closing software tool that uses long reads to enhance genome assembly.

Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Carolina at Charlotte (UNCC)

Rapid comparison and dereplication of genomes

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage

🛠️🧬 A Software Framework to Manipulate Assembly Graphs

A fast lossless FASTQ compressor with ultra-high compression ratio

A privacy-first app that strips AI watermarks from content you own.

Dot: An interactive dot plot viewer for comparative genomics

Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

The SQL IDE for Your Terminal. Now with hsql, your agent's favorite sql client.

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Research code accompanying AlphaGenome

k-mer based assembly evaluation

Unsupervised Deep Gene Finding